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    Home » Recipes » Desserts » Apple Crisp with Fresh Milled Flour

    Apple Crisp with Fresh Milled Flour

    anya author bio for prepare and nourish
    Modified: Feb 13, 2026 · Published: Jan 28, 2026 by Anya · This post may contain affiliate links · Leave a Comment
    Jump to Recipe Jump to Video Print Recipe
    Apple crisp made with fresh-milled flour served in a bowl with a spoon and topped with vanilla ice cream.

    Apple crisp with fresh milled flour is an easy, beginner-friendly recipe made with baked apples, maple syrup, sprouted oats, and a buttery topping. Simple to make, freezer-friendly, and great for feeding a crowd.

    Apple crisp made with fresh-milled flour served in a bowl with a spoon and topped with vanilla ice cream.
    Jump to:
    • 💡Recipe Overview
    • Ingredients for 'FMF' Apple Crisp
    • Substitutions and Variations
    • How to Make Apple Crisp with Fresh Milled Flour
    • Helpful Tips
    • Serving Suggestions
    • Frequently Asked Questions
    • Printable Recipe

    💡Recipe Overview

    • Prep and Cook Time: 15 minutes to prep and 45 minutes to bake
    • Cooking Method: ven-baked
    • Dietary Info: Ancestral diet
    • Skill Level: easy

    What is an ancestral diet? Read my post on what nourishing foods are based on the traditional dietary principles of the Weston A. Price Foundation.

    Why Flour Quality Matters in Crisp Recipes

    I’ve been making some version of apple crisp for years, but once I started using fresh milled flour, I noticed something I honestly hadn’t paid much attention to before - flour actually has flavor.

    It sounds obvious, yet it completely changed how I thought about very basic baked goods.

    In fact, I'd say I wasn't much of a dessert person until I started baking with fresh milled flour and it blew me away.

    This recipe stays in steady rotation because it’s easy to throw together, easy to scale, and works for everything from a regular weeknight to holidays or guests, like shown here on The Shared Table (a hospitality series on my YouTube channel). Most often, I serve it warm with vanilla ice cream after something straightforward like soup, chili, or roast chicken. It’s familiar, practical, and never feels like unnecessary effort. If easy had flavor and texture, it'd be this apple crisp.

    image of Prepare and Nourish owner

    Ingredients for 'FMF' Apple Crisp

    • Wheat berries - I milled kamut and hard white wheat berries for this apple crisp. Kamut produces a softer, buttery, slightly more tender flour, while hard white wheat provides structure. This combination creates a muffins that holds together well without becoming dense. If you don’t mill your own flour, store-bought all-purpose flour can be used instead.
    • Apples - Cut into evenly sized chunks for consistent texture. Most varieties work well, including Honeycrisp, Fuji, Gala, or Granny Smith. A mix of sweet and tart apples is a good option.
    • Maple syrup - Honey can be used if needed, though it will slightly change the flavor.
    • Pure vanilla extract - Adds additional flavor to the filling. Real vanilla extract is recommended over imitation.
    • Seasonings - ground cinnamon, nutmeg, and a little bit of salt to add flavor.
    • Butter - To create the crumble texture. Butter should be cold and cubed. Salted or unsalted butter can be used but if using salted, skip the additional salt in the crumble.
    • Sprouted rolled oats - I love using a brand that makes sprouted rolled oats. It adds texture to the topping. Regular rolled oats work as a direct substitute. Sprouted oats are commonly available at natural grocery stores or online.

    Substitutions and Variations

    • Add-ins - Chopped nuts such as pecans or walnuts can be added to the topping for extra texture. Raisins, shaved coconut chips, or dried cranberries can be mixed into the filling if desired.
    graphic of fork and spoon connected in a plant.

    Make it Ancestral

    I’ve really been loving baking with fresh milled flour, and this apple crisp is a great example of why. Freshly milled grains bring a noticeable flavor that you simply don’t get from store-bought flour.

    For this recipe, I like using a blend of kamut and hard white wheat berries. Kamut produces a softer flour, while hard white wheat adds enough structure to help the crumble hold together. That said, this recipe is very forgiving, which makes it a great place to experiment if you’re newer to fresh milled flour.

    Apple crisp made with fresh-milled flour served in a bowl with a spoon and topped with vanilla ice cream.

    How to Make Apple Crisp with Fresh Milled Flour

    The complete printable recipe is below in the recipe card for your convenience. Follow these simple step-by-step instructions for the best results.

    Apple filling ingredients mixed in a baking dish and coated with fresh milled flour.

    Step 1.

    Mix all of the filling ingredients, including apples, maple syrup, vanilla, ground cinnamon, nutmeg, and salt together in the baking dish. Coat with a little bit of fresh milled flour. Set aside.

    Whisking flour, brown sugar, cinnamon, and butter into a crumbly topping mixture.

    Step 2.

    Whisk flour, light brown sugar, and ground cinnamon together in a medium bowl. Cut in cold butter chunks using a pastry cutter or fork until the mixture becomes crumbly. It doesn’t have to be smooth.

    Sprouted oats stirred in and crumble topping evenly spread over the apple filling.

    Step 3.

    Stir in  rolled oats. Add the crumble topping over the filling, making sure to spread evenly across the apples. No need to press down but make sure it's even.

    Apple crisp baked until golden and bubbling, cooling before serving with vanilla ice cream.

    Step 4.

    Bake for 45 minutes, until the topping turns golden brown and the fruit juices start bubbling at the edges. Remove from the oven and let it cool on a wire rack for at least 5 minutes. 

    Helpful Tips

    1. Cut apples evenly: Aim for ¼–½ inch pieces so everything bakes at the same rate and you don’t end up with crunchy apples mixed with overcooked ones.
    2. Keep the butter cold: Cold, cubed butter creates a crumblier topping and better texture once baked - warm butter will melt too quickly and flatten the topping.
    3. Don't overwork the topping: Stop cutting in the butter while the mixture still looks crumbly and uneven; those little butter pockets are what make the crisp topping crisp. No need to get everything smooth.
    4. Let it rest before serving: Resting for at least 10 minutes helps the filling set so it scoops cleanly instead of running all over the plate.
    💭Meal Prep Suggestion!
    This apple crisp is easy to prepare ahead of time. Assemble the filling and topping, cover the baking dish, and refrigerate for up to 24 hours before baking. When ready to serve, transfer it directly from the refrigerator to the oven.

    You can also bake the crisp in advance and store it covered in the refrigerator. Reheat in a warm oven until heated through. This makes it a practical dessert for gatherings, holidays, or busy weeks.
    Apple crisp made with fresh-milled flour served in a bowl with a spoon and topped with vanilla ice cream.

    Serving Suggestions

    Apple crisp is traditionally served warm, often with a scoop of vanilla ice cream or a dollop of whipped cream. It can be enjoyed fresh from the oven, at room temperature, or even cold straight from the refrigerator. Try my paleo ice cream!

    For everyday meals, this crisp works well as a simple dessert after dinner, especially alongside lighter meals. It pairs nicely with straightforward dishes like roasted chicken, soups, or skillet meals.

    Apple crisp made with fresh-milled flour served in a bowl with a spoon and topped with vanilla ice cream.

    Frequently Asked Questions

    How do I store and reheat apple crisp?

    Store leftover apple crisp in an airtight container for up to 5 days. These glass snap containers are perfect for leftovers. To reheat, transfer the apple crisp to a small baking pan, cover it, and bake in a 350°F oven for about 30 minutes, or until warmed through.

    Can I freeze apple crisp with kamut?

    Yes, the crisp freezes well for up to 3 months.  Thaw overnight in the fridge and reheat per instructions.

    Why is my topping soft instead of crisp?

    This typically happens if the butter was too warm, partially melted, or if the topping was mixed too thoroughly. The crumble relies on small pieces of cold butter distributed throughout the flour. As the crisp bakes, those butter pieces melt and create the crumbly texture. If the butter softens too much during mixing, it blends into the flour instead of staying in distinct pieces, which can lead to a denser, softer topping. To prevent this, use cold butter straight from the refrigerator and stop mixing while the topping still looks uneven and crumbly.

    Looking for more related recipes? Here are some ideas:
    • Kamut & Apple Muffins with Coconut Sugar Crumble
    • stuffed apple half with ice cream and caramel drizzle.
      Healthy Stuffed Baked Apples
    • peach cobbler with vanilla ice cream on white plate.
      Easy Peach Cobbler in Skillet
    • Paleo Coconut Flour Banana Bread Muffins -Made with coconut flour and are dairy free, nut free, gluten and grain free. They make a delicious, perfectly moist Paleo treat or breakfast on the go. #nutfree #bananabread
      Easy Coconut Flour Banana Muffins Recipe
    Did you make this apple crisp with whole grains? Please leave a ⭐⭐⭐⭐⭐ recipe rating in the recipe card below and leave a review in the comments. Thank you!💚

    Printable Recipe

    apple crisp in a bowl with vanilla ice cream and mint leaf as garnish.

    Apple Crisp with Fresh Milled Flour

    Anya @ Prepare & Nourish
    Apple crisp with fresh milled flour combines tender baked apples, maple syrup, sprouted oats, and a crisp buttery topping. Simple to make, freezer-friendly, and great for feeding a crowd.
    No ratings yet
    Print Recipe Pin Recipe Save RecipeSaved!
    Prep Time 15 minutes mins
    Cook Time 45 minutes mins
    Resting Time 10 minutes mins
    Total Time 1 hour hr 10 minutes mins
    Course Dessert
    Cuisine American
    Servings 8 servings
    Calories 442 kcal

    Ingredients
      

    Filling

    • 8 medium apples cut into 1-inch chunks that are ¼ - ½ “ thick
    • ½ cup maple syrup
    • 1 teaspoon pure vanilla extract
    • 1 teaspoon ground cinnamon
    • ½ teaspoon ground nutmeg
    • ¼ teaspoon salt
    • ¼ cup fresh milled flour

    Topping

    • 1 cup fresh milled flour ½ cup kamut, ½ cup hard white berries
    • ¾ cup light brown sugar
    • 1 teaspoon ground cinnamon
    • ½ cup unsalted butter cold and cubed
    • 1 cup sprouted rolled oats
    • vanilla ice cream for serving
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    Instructions
     

    • Preheat oven to 350°F (177°C).
    • Mix all of the filling ingredients, including 8 medium apples, ½ cup maple syrup, 1 teaspoon pure vanilla extract, 1 teaspoon ground cinnamon, ½ teaspoon ground nutmeg, and ¼ teaspoon salt together in the baking dish. Coat with ¼ cup fresh milled flour. Set aside.
    • Whisk 1 cup fresh milled flour, ¾ cup light brown sugar, and 1 teaspoon ground cinnamon together in a medium bowl. Cut in ½ cup unsalted butter using a pastry cutter or fork until the mixture becomes crumbly. It doesn’t have to be smooth.
    • Stir in 1 cup sprouted rolled oats. Add the crumble topping over the filling, making sure to spread evenly across the apples. No need to press down but make sure it's even.
    • Bake for 45 minutes, until the topping turns golden brown and the fruit juices start bubbling at the edges. Remove from the oven and let it cool on a wire rack for at least 5 minutes. Serve warm, room temperature, or cold, with (optional) vanilla ice cream for serving.

    Video

    Notes

    Nutrition Facts does not reflect vanilla ice cream. 
    Storage: Cover the baking dish or transfer leftovers to an airtight container and refrigerate for up to 5 days. 
    Make Ahead & Freezing Instructions: This crisp can be assembled the day before and baked when you’re ready to serve. Prepare the recipe through step 3, then cover and refrigerate for up to 24 hours before baking.
    Once baked and cooled, the crisp also freezes well for up to 3 months. Thaw overnight in the refrigerator, then reheat, covered, in a 350°F oven for about 30 minutes, or until warmed through.
    Helpful Tips:
    1. Cut apples evenly: Aim for ¼–½ inch pieces so everything bakes at the same rate and you don’t end up with crunchy apples mixed with overcooked ones.
    2. Keep the butter cold: Cold, cubed butter creates a crumblier topping and better texture once baked - warm butter will melt too quickly and flatten the topping.
    3. Don't overwork the topping: Stop cutting in the butter while the mixture still looks crumbly and uneven; those little butter pockets are what make the crisp topping crisp. No need to get everything smooth.
    4. Let it rest before serving: Resting for at least 10 minutes helps the filling set so it scoops cleanly instead of running all over the plate.
     

    Nutrition

    Calories: 442kcal | Carbohydrates: 81g | Protein: 4g | Fat: 13g | Saturated Fat: 8g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 3g | Trans Fat: 0.5g | Cholesterol: 31mg | Sodium: 85mg | Potassium: 332mg | Fiber: 6g | Sugar: 51g | Vitamin A: 454IU | Vitamin C: 8mg | Calcium: 67mg | Iron: 2mg
    Nutrition Information
    The information shown is an estimate provided for your convenience by an online calculator. It should not be considered as a substitute for a professional nutritionist's advice. See our complete Nutritional Information Disclaimer.
    Keyword apple crisp, fresh milled flour
    ©Prepare and Nourish • Content and photographs are copyright protected. Sharing of this recipe is encouraged and appreciated but please do NOT screenshot or copy/paste complete recipes to websites or social media.
    DID YOU MAKE THIS RECIPE?Leave a comment below and share a photo on Instagram. Mention @prepareandnourish and be sure to tag #prepareandnourish!

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