• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
  • Home
  • About
  • Contact
  • Privacy Policy
  • START HERE
  • Nav Social Menu

    • Facebook
    • Instagram
    • Pinterest
    • YouTube
Prepare + Nourish logo
  • Recipes
  • Shop
  • Subscribe
menu icon
go to homepage
subscribe
search icon
Homepage link
  • Home
  • Recipes
  • Shop
  • About
  • Contact
  • Privacy Policy
  • First Time? Start Here
    • Facebook
    • Instagram
    • Pinterest
    • YouTube
  • ×
    Home » Recipes » Desserts » Healthy Double Chocolate Chip Muffins

    Healthy Double Chocolate Chip Muffins

    by: Anya·posted: May 24, 2022·updated: Aug 2, 2022·19 CommentsThis post may contain affiliate links. Please read my disclosure policy.

    Jump to Recipe Jump to Video Print Recipe
    Double Chocolate Flourless Muffins

    Rich in chocolate and naturally sweetened with honey and banana, these Healthy Chocolate Muffins are completely flour-less and made in the blender with only 6 main ingredients.

    Flourless muffins stacked on top of each other and one is half eaten.

    Healthy Chocolate Muffins

    These Chocolate Muffins are made with simple ingredients that you most likely already have at home.

    Most importantly, they are all clean ingredients that you will feel good about serving your family. Naturally sweetened with only banana and a bit of honey, these muffins aren't overly too sweet but if you need more sweetness, I recommend adding a few drops of stevia extract so as to not alter the texture.

    They are perfectly moist, rich in chocolate and decadent texture -- these easy blender muffins are ideal for a sweet treat after a meal.

    With 5 grams of protein in one serving, these muffins have a good macro ratio, which is always great at keeping those blood sugars stable.

    The best part is that these Healthy Chocolate Muffins are easily made in a blender and they freeze well making them perfect for school lunches.

    Why you should make these Healthy Chocolate Muffins

    I know that there are a myriad of "healthy" chocolate muffins on the internet. In fact, healthy is such a subjective term that what would be considered healthy for one person may not be so for another.

    What makes these muffins stand out from the rest is that they are entirely flour-less and intentionally full of nourishing ingredients. Even though I don't ascribe to vegan recipes, this recipe in particular is naturally dairy free but without sacrificing healthy fats and nutrients that can only be found in animal products.

    Flourless double chocolate muffins that are healthy for you.

    Flour-less Chocolate Muffins

    The more I learn about food sensitivities and health in general, the more I realize that it's not so much about omitting foods that wreak havoc on your body but it's just as important to include nutrient dense foods as much as possible.

    Even though I can probably do without - kids are naturally drawn to sweets and treats. And I'm fine with that provided that these treats are made with wholesome ingredients and as healthy as can be.

    These Healthy Chocolate Muffins are not only gluten-free but they are entirely flour-less. No wheat flour. Not even gluten-free flour. No almond flour or coconut flour. None. And yet, the texture is still perfectly moist, crumbly, and delicious.

    The ingredients that bind these chocolate muffins together are the egg and almond butter and it yields the most perfectly flavored chocolate muffins. Using nut butter will yield rich and soft muffins.

    High Protein Chocolate Muffins

    These chocolate muffins are surprisingly full of protein. They are naturally sweetened with banana and honey and the almond butter is rather satiating for a sweet treat.

    Want to up the protein? You may also add additional collagen peptides for a boost. (Use discount code PREPARE10 for 10% off my favorite 3rd party tested hydrolyzed collagen). Having those complimentary macros in a balance will help keep the blood sugar stable.

    A serving of one muffin has 5 grams of protein, if adding the collagen. You can double that without sacrificing texture for twice more protein.

    chocolate chips in chocolate batter in food processor

    Double Chocolate Muffins

    Want more chocolate with your chocolate muffins?

    Add some chocolate chips to make them Chocolate Chip Muffins. Just be sure to use fair trade chocolate. We love Lily's because it's sugar-free and low carb and even though these chocolate chip muffins aren't necessarily low-carb, I always appreciate cutting sugars whenever I can.

    Healthy Chocolate Muffins with Banana

    I love using overripe bananas to naturally sweeten baked treats to avoid using additional sugar.

    If you don't care for the banana flavor, don't worry. Between all that chocolate, you won't even taste the banana in these healthy chocolate muffins.

    But an easy way to mask the banana flavor is to add vanilla bean powder. This powder is 100% pure ground vanilla bean powder and is more potent than the extract. Just ⅛ teaspoon of dried vanilla beans will do the trick.

    A stack of 3 double chocolate banana and flourless muffins.

    What nut butter can I use in flour-less muffins?

    The best nut butter to use in chocolate muffins is the one that your family enjoys.

    My default is almond butter. I find it's relatively inexpensive and the organic version is widely available in my town. Cashew butter would be great too but it's pretty pricey if baking with it.

    Peanut butter in particular would be a fantastic swap in these healthy chocolate muffins since peanut butter and chocolate pair so well together.

    As always and with every packaged food, be careful to read the ingredient label to be sure to avoid nasty additives. Most nut butters should only have the nuts and possibly sea salt but check to make sure it's not rancid.

    Lastly, it's important to note that these muffins, although healthy, are still a treat, meant to be enjoyed sporadically and after a full meal. Nuts in excess can be hard to digest if not properly prepared so as with everything else, it's best consumed in moderation and with a nourishing diet.

    Frequently Asked Questions & Tips

    Can I freeze chocolate muffins?

    Yes, these muffins freeze beautifully. Simply transfer the fully cooled muffins into a freezer-safe and airtight container and close the lid. May be kept in the freezer for up to 4 months. To enjoy, just thaw at room temperature for a few hours-overnight or reheat in convection oven for 6 minutes.

    What can be used instead of chocolate chips?

    Sometimes good quality chocolate chips are hard to come by. You can use a chocolate bar in a pinch. Just coarsely chop it before adding it into the muffin mixture. Semi-sweet chocolate chips are best for this recipe and I used this brand.

    Can these muffins be made GAPS compliant?

    Cacao Powder is allowed in the later stages of the GAPS protocol. To make these muffins GAPS compliant, you'll need to put a little more effort at sourcing the clean(er) chocolate. This Pure7 brand is honey sweetened and is free from junk. Or you can skip the chocolate and instead use fermented cacao nibs instead for more bold muffins. If you would like to cut down the sugar content, I love using Lily's baking chips.

    What is the best way to enjoy these muffins?

    To additionally help support the balance of carbs, fats, and proteins, it's great to enjoy these muffins with a healthy drink. My kids love these blender muffins with a tall glass of raw milk for a nutritious after school treat.

    Read why we LOVE raw milk HERE.

    How to Make Healthy Chocolate Muffins

    The complete printable recipe is below in the recipe card for your convenience.

    These chocolate muffins are crazy easy and can be easily whipped up in a blender or food processor. It has egg, banana, nut butter, cocoa powder, honey, collagen peptides, vanilla, baking soda, sea salt, and chocolate chips.

    Making flourless muffins in a food processor shown steps one and two.

    Blend egg, banana, and almond butter in a processor. Add cacao powder, salt, and vanilla and blend for another 30 seconds.

    Add baking soda and pulse just enough to combine. Don't overmix. Stir in chocolate chips and scoop approximately ½ cup of batter into each muffin.

    Making healthy chocolate muffins in a food processor with extra double chocolate chips.

    Bake until toothpick comes out clean.  Once baked, transfer the muffins from the pan onto a cooling rack and allow to rest for 15 minutes. You can dig in right away but be careful with the melted chocolate!

    Store these muffins at room temperature for up to 4 days. If wanting to store them longer, stick them into the refrigerator or freeze them for longer.

    Helpful Tools & Links

    • Food Processor OR Blender: These muffins come together rather quickly and effortlessly with a blender.
    • Chocolate Chips: I use these mini semi-sweet chips. Use your favorite clean brand. You can also use a honey-sweetened chocolate bar.
    • Stainless Steel Muffin Pan: These stainless steel pans are perfect for all your muffins, cupcakes and egg cup needs.
    • Muffin Liners: I love these unbleached baking cups. I typically buy the 3 pack and am always ready for when my muffin craving hits. 😉

    Want more healthy baked treats?

    • Paleo Coconut Flour Banana Bread Muffins
    • Flourless Chocolate Chip Pumpkin Bars
    • Almond Orange Cookies
    • Gluten-Free Snickerdoodles
    Did you make this? Please leave a ⭐ recipe rating in the recipe card below and leave a review in the comments. Thank you!💚

    Printable Recipe

    Flourless muffins stacked on top of each other and one is half eaten.

    Healthy Chocolate Muffins

    Anya @ Prepare & Nourish
    Rich in chocolate and naturally sweetened, these paleo treats are easily made in the blender with only 6 main ingredients. They pack easily and freeze perfectly - make them today! 
    5 from 9 votes
    Print Recipe Pin Recipe Save RecipeSaved!
    Prep Time 15 minutes mins
    Cook Time 15 minutes mins
    Total Time 30 minutes mins
    Course Dessert
    Cuisine American
    Servings 12 muffins
    Calories 245 kcal

    Ingredients
      

    • 1 over-ripe banana
    • 1 egg
    • ½ cup almond butter
    • ⅓ cup honey
    • ¼ cup cacao powder
    • 2 tablespoons collagen peptides optional
    • 1 teaspoon vanilla extract
    • ½ teaspoon baking soda
    • ¼ teaspoon sea salt
    • ½ - 1 cup semi-sweet chocolate chips
    Prevent your screen from going dark

    Instructions
     

    • Preheat oven to 350 degrees Fahrenheit. Line muffin pan with liners or grease well with coconut oil. In a food processor or blender, combine banana, egg, honey and almond butter until smooth and consistent.
      banana, egg, and almond butter in a food processor
    • Add cacao powder, sea salt, vanilla extract and blend for 30 more seconds.
      chocolate batter with cocoa in a food processor
    • Add baking soda and pulse just enough to combine into the mixture but don't overmix. Stir in chocolate chips.
      chocolate muffin batter in food processor with chocolate chips
    • Pour batter into prepared muffin pan. Bake for 13-16 minutes or until toothpick comes out clean. 
      muffin pan with chocolate muffin batter and chocolate chips
    • Keep muffins in an airtight container for up to 5 days at room temperature or refrigerator. 
      Half eaten double chocolate muffin that is gluten free and sweetened with banana.

    Video

    Notes

    • To reduce the flavor of banana, look for one with less brown spots.
    • You may use sugar free chocolate chips such as Lily's to keep the carb count lower.
    • For additional boost of protein, add collagen peptides to the batter before baking. 

    Nutrition

    Calories: 245kcal | Carbohydrates: 25g | Protein: 5g | Fat: 15g | Saturated Fat: 6g | Polyunsaturated Fat: 2g | Monounsaturated Fat: 6g | Trans Fat: 1g | Cholesterol: 15mg | Sodium: 106mg | Potassium: 278mg | Fiber: 4g | Sugar: 18g | Vitamin A: 37IU | Vitamin C: 1mg | Calcium: 56mg | Iron: 2mg
    Nutrition Information
    The information shown is an estimate provided for your convenience by an online calculator. It should not be considered as a substitute for a professional nutritionist's advice. See our complete Nutritional Information Disclaimer.
    Keyword Dairy-free, flourless chocolate muffins, GAPS, healthy chocolate muffins, paleo, primal
    ©Prepare and Nourish • Content and photographs are copyright protected. Sharing of this recipe is encouraged and appreciated but please do NOT screenshot or copy/paste complete recipes to websites or social media.
    DID YOU MAKE THIS RECIPE?Leave a comment below and share a photo on Instagram. Mention @prepareandnourish and be sure to tag #prepareandnourish!

    This post was originally published January 2018 but has since been updated to include helpful information.

    More Desserts

    • Chia seed puddings in clear cups, served on a white plate with a strawberry and spoon on the side.
      Protein Chia Seed Pudding
    • baked oats on a white plate with fresh berries and whipped cream and maple syrup drizzle.
      Gluten-Free Baked Protein Oats Recipe with Bananas
    • a close up of a few marshmallows with a white back drop.
      Easy Gluten Free Rice Krispie Treats Recipe
    • two bowls filled with cottage cheese and fresh strawberries, raspberries, blueberries, and blackberries and topped with honey; spoons in the bowls.
      Easy Cottage Cheese with Fruit Bowl Recipe
    • Facebook
    • Email

    About Anya

    Sharing wholesome recipes using seasonal ingredients and simplified methods since 2014. My hope is you'll feel right at home in this online kitchen, where you'll find real food recipes for real families.

    Reader Interactions

    Comments

      5 from 9 votes (4 ratings without comment)

      Leave a Reply Cancel reply

      Your email address will not be published. Required fields are marked *

      Recipe Rating




    1. Michelle says

      January 27, 2018 at 5:26 pm

      We have but allergies, tree nuts. The only nut my kids can do are peanuts. I have heard you can sub sunflower seed butter for almond butter. Would this work here?

      Thanks

      Reply
      • Anya says

        January 28, 2018 at 10:33 am

        I don't see why not.

        Reply
        • Karen says

          February 14, 2018 at 3:08 pm

          I substituted sunflower butter and it was really good!

          Reply
          • Anya says

            February 16, 2018 at 4:13 pm

            That's great, Karen. Thanks for letting us know. xo

            Reply
    2. Amanda J says

      February 10, 2018 at 2:44 pm

      Just made these, they are delicious! Thanks for the recipe, it’s destined to be one of my favorites.

      Reply
      • Anya says

        February 11, 2018 at 8:18 am

        Thanks Amanda for the sweet note! Enjoy your new favorite!

        Reply
    3. ~Vicki says

      February 12, 2018 at 7:59 pm

      Substitute for almond butter anyone? Thank you!

      Reply
      • Anya says

        February 13, 2018 at 11:09 am

        You can try sunbutter. 🙂

        Reply
    4. Kate says

      February 13, 2018 at 6:07 pm

      Hi! I’m wondering if a gelatin “egg” would work in place of the egg? Thanks!

      Reply
      • Anya says

        February 14, 2018 at 8:47 am

        It should! Give it a shot, Kate. 🙂

        Reply
    5. Karen T says

      February 02, 2019 at 6:16 pm

      These flourless double chocolate muffins are phenomenal!!!! So gooey and rich - like soft fudgy brownies! I’ve tried many flourless recipes and these are the best I’ve ever tried by far. My family is pleading for more! Just one question, do they always sink down in the middle for you? I’ve made 5 dozen so far and every time they sink down in the middle. Still taste amazing so I don’t really care but just wondering if I am doing something wrong as it would be nice if they didn’t cave in. Thank you!

      Reply
      • Anya says

        February 04, 2019 at 9:20 am

        Thank you Karen for the great review! Baked goods can cave in anytime a lot of air is mixed into the batter. Try to blend the batter just enough to combine everything and not a second more. Hope that helps!

        Reply
    6. Sonia says

      August 20, 2019 at 5:49 am

      This is the best Paleo chocolate dessert recipe I've
      ever found!! I used sunflower butter and the end result was an incredibly creamy and fudgey cupcake. They melt in your mouth! Thank you so much for sharing! 🙂

      Reply
      • Anya says

        August 21, 2019 at 1:10 pm

        Thank you Sonia! Wonderful to hear. They are our favorite!

        Reply
    7. cecelia says

      August 17, 2020 at 4:07 pm

      I am not a big fan of bananas but hardly tasted them in this recipe. I will for sure make these again. They are delicious. I used the mini muffin tins. They are good warm or cold

      Reply
    8. Elaine says

      October 01, 2022 at 9:47 pm

      These were delicious. Gooey, fudgy and hit the perfect spot on a rainy Australian spring afternoon. I used cashew butter as that is what I had on hand 🥰🥰

      Reply

    Primary Sidebar

    Anya at a farm

    Hello and welcome

    I'm Anya and it is my joy to share wholesome recipes using seasonal ingredients and simplified methods. My hope is you'll feel right at home in this online kitchen, where you'll find real food recipes for real families.

    More about me →

    Eating Nose-to-Tail? Try these

    collage of delicious recipes using organ meats.

    Seasonal Summer Favorites

    • fermented pickles in a weck jar with a red hot pepper.
      Easy Lacto-Fermented Dill Pickles Recipe
    • Sheet pan nachos with ground pork and vegetables on a tray.
      Loaded Sheet Pan Nachos Without Beans
    • Ahi tuna poke in a white bowl, with mayonnaise, chopsticks on the side, and green onion leeks in a beige bowl.
      Simple Ahi Tuna Poke Recipe
    • starbucks pink drink in plastic cups with fresh strawberries on the side.
      Starbucks Pink Drink Recipe (Healthy!)
    • Ground beef with broccoli and rice on a plate, with extra ground beef, broccoli in a pan, and spices on the side.
      Ground Beef and Broccoli Recipe
    • two bowls filled with cottage cheese and fresh strawberries, raspberries, blueberries, and blackberries and topped with honey; spoons in the bowls.
      Easy Cottage Cheese with Fruit Bowl Recipe

    Trending Now

    • mushrooms and chicken gravy with fresh thyme sprigs garnished on top.
      Easy Creamy Chicken Liver Recipe
    • stack of cassava flour crepes on a plate for frozen blackberries.
      Easy Gluten-Free French Crêpes Recipe
    • roasted cabbage with parsley garnish sprinkled on top.
      Simple Oven Roasted Buttered Cabbage Recipe
    • Caesar salad dressing in a weck jar
      Healthy Caesar Salad Dressing Recipe
    • Pickled red onions in a white bowl and in a clear jar beside it.
      Quick Pickled Red Onions (No Cook!)
    • Chia seed puddings in clear cups, served on a white plate with a strawberry and spoon on the side.
      Protein Chia Seed Pudding

    Footer

    ↑ back to top

    Never miss a new post!

    ... Subscribe

    About

    About Me

    Privacy Policy

    Contact

    Shop

    Recipes

    Recipe Index

    Dinner Recipes

    Fermentation Recipes

    Healthy Basics

    Connect

    Instagram

    Facebook

    Pinterest

    Youtube

    Copyright © 2025 Prepare + Nourish

    • Pinterest
    • Facebook

    Rate This Recipe

    Your vote:




    Let us know what you thought of this recipe:

    This worked exactly as written, thanks!
    My family loved this!
    Thank you for sharing this recipe.
    This recipe is a winner! Will make again.

    Or share in your own words:

    A rating is required
    A name is required
    An email is required

    Recipe Ratings without Comment

    Something went wrong. Please try again.